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--- publications [2026/05/21 13:56] – patty
+++ publications [2026/05/22 14:27] (current) – christi
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 |~~=row()~~.| Kumar, V., Rosembaum, J., Wang, Z., Forcier, T., Ronemus, M., Wigler, M. and Levy, D. | 2018 | Partial bisulfite conversion for unique template sequencing.  Nucleic Acids Research, 46: e10.  PMCID: 5778454 | {{:Kumar_et_al_Nucleic_Acids_Res_2017.pdf|PDF}} |
 |~~=row()~~.| Li, S., Kendall, J., Park, S., Wang, Z., Alexander, J., Moffitt, A., Ranade, N., Danyko, C., Gegenhuber, B., Fischer, S., Robinson, B.D., Lepor, H., Tollkuhn, J., Gillis, J., Brouzes, E., Krasnitz, A., Levy, D. and Wigler, M. | 2019 | Copolymerization of single-cell nucleic acids into balls of acrylamide gel. Genome Research, 30: 49-61.  PMCID: 6961581 | {{:Li_et_al_Genome_Res_2019.pdf|PDF}} |
+|~~=row()~~.| Andrews, Peter A., Alexander, J., Kendall, J. and Wigler, M. | 2019 | G-Graph: An interactive genomic graph viewer. bioRxiv/2019/803015 | {{ :andrews_et_al_biorxiv_2019.pdf |PDF}} |
 |~~=row()~~.| Moffitt, A.B., Spector., M.S., Andrews, P., Kendall, J., Alexander, J., Stepansky, A., Ma, B.C., Kolitz, J., Chiorazzi, N., Allen, S.L., Krasnitz, A., Wigler, M., Levy, D. and Wang, Z. | 2020 | Multiplex accurate sensitive quantitation (MASQ) with application to minimal residual disease in acute myeloid leukemia.  Nucleic Acids Research, 48: e40.  PMCID: 7144909 | {{:Moffitt_et_al_nar_2020.pdf|PDF}} |
 |~~=row()~~.| Chorbadjiev, L., Kendall, J., Alexander, J., Zhygulin, V., Song, J., Wigler, M. and Krasnitz, A. |2020| An integrated computational pipeline for single-cell genomic profiling. JCO Clin. Cancer Inform., 4: 464-471. | {{: Chorbadjiev_et_al_jcoclincaninform_2020.pdf|PDF}} |
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 |~~=row()~~.| Wroten M, Yoon S, Andrews P, Yamrom B, Ronemus M, Buja A, Krieger AM, Levy D, Ye K, Wigler M, and Iossifov I. |2023| Sharing parental genomes by siblings concordant or discordant for autism. Cell Genomics 3: 100319. PMCID: PMC10300587 | {{:Wroten_et_al_Cell_Genomics_2023.pdf|PDF}} |
 |~~=row()~~.| Lammertse E, Li S, Kendall J, Kim C, Morris P, Ranade N, Levy D, Wigler M, Brouzes E. |2023| Magnetically functionalized hydrogels for high-throughput genomic applications. Adv Mater Technol 9: (2):2301155. PMCID: PMC11029686. | {{:brouzes_et_al_adv_materials_technologies_2023.pdf|PDF}} |
-|~~=row()~~.| 208.	Swamynathan MM, Kuang S, Watrud KE, Doherty MR, Gineste C, Mathew G, Gong GQ, Cox H, Cheng E, Reiss D, Kendall J, Ghosh D, Reczek CR, Zhao X, Herzka T, Kim S, Klingbeil O, Liu J, Nowak DG, Alsudani H, Wee T-L, Park Y, Minicozzi F, Rivera K,  Almeida AS, Chang K, Chakrabarty RP, Wilkinson JE, Gimotty PA, Diermeier SD, Egeblad M, Vakoc CR, Locasale JW, Hicks JB, Wigler M, Chandel NS, Janowitz T, Pappin DJ, Williams RL, Cifani P, Tuveson DA, Laporte J, Trotman, LC. |2024| Pro-oxidant therapy by a vitamin K precursor targets PI 3-Kinase VPS34 function. Science, 386: eadk9167. doi: 10.1126/science.adk9167. | {{:add-doc.pdf|PDF}} |
+|~~=row()~~.| Swamynathan MM, Kuang S, Watrud KE, Doherty MR, Gineste C, Mathew G, Gong GQ, Cox H, Cheng E, Reiss D, Kendall J, Ghosh D, Reczek CR, Zhao X, Herzka T, Kim S, Klingbeil O, Liu J, Nowak DG, Alsudani H, Wee T-L, Park Y, Minicozzi F, Rivera K,  Almeida AS, Chang K, Chakrabarty RP, Wilkinson JE, Gimotty PA, Diermeier SD, Egeblad M, Vakoc CR, Locasale JW, Hicks JB, Wigler M, Chandel NS, Janowitz T, Pappin DJ, Williams RL, Cifani P, Tuveson DA, Laporte J, Trotman, LC. |2024| Pro-oxidant therapy by a vitamin K precursor targets PI 3-Kinase VPS34 function. Science, 386: eadk9167. doi: 10.1126/science.adk9167. | {{:swamynathan_et_al_science.2024.pdf|PDF}} |
 |~~=row()~~.| Li S, Alexander J, Kendall J, Andrews P, Rose E, Orjuela H, Park S, Podszus C, Shanley L, Ranade N, Morris P, Stauder D, Bradford D, Laster Z, Ronemus M, Rishi A, Frimer M, Ma R, Donoho DL, Goldberg GL, Wigler M, Levy D. |2025| Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples. Genome Biol. 2025 Sep 27;26(1):314. doi: 10.1186/s13059-025-03790-5. PMID: 41015771; PMCID: PMC12476631. | {{:li_et_al_genome_biology_2025.pdf|PDF}} |
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